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petab1to2: deterministic name for pre-existing experimentId colum…
#4207
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| name: CI | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '48 4 * * *' | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| platform: [windows-latest, macos-latest, ubuntu-latest] | |
| python-version: ["3.12", "3.14"] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v7 | |
| - name: Install uv and python ${{ matrix.python-version }} | |
| uses: astral-sh/setup-uv@v10.0.1 | |
| with: | |
| enable-cache: true | |
| python-version: ${{ matrix.python-version }} | |
| - name: Quality tests | |
| run: uvx pre-commit run --all-files | |
| if: matrix.platform == 'ubuntu-latest' | |
| - name: Fetch BNGL test corpus | |
| run: uv run --no-project python -P tests/v1/fetch_bngl_corpus.py | |
| - name: Unit tests | |
| run: | | |
| uv sync --no-default-groups --group test | |
| uv pip list | |
| uv run pytest --cov=petab --cov-report=xml --cov-append --durations=10 tests | |
| - name: Coverage | |
| uses: codecov/codecov-action@v7 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage.xml | |
| if: matrix.platform == 'ubuntu-latest' && matrix.python-version == '3.14' |