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Create CommunityCloud-Bundle-Example.json
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‎Bundle/CommunityCloud-Bundle-Example.json‎

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{
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"resourceType": "Bundle",
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"type": "transaction",
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"entry": [
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{
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"fullUrl": "urn:uuid:1e6aef26-d201-43d1-b54c-087cd4ee5c24",
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"resource": {
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"resourceType": "DocumentReference",
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"id": "1e6aef26-d201-43d1-b54c-087cd4ee5c24",
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"meta" : {
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"profile" : [
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"http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-data-file"
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]
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},
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"status": "current",
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"subject": {
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"identifier": {
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"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
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"value": "SomePatientIdentifier"
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}
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},
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"author": [
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{
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "699M0"
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},
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"display": "NHS EAST GENOMIC LABORATORY HUB"
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}
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],
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"content": [
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{
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"attachment": {
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"contentType": "application/gzip",
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"url": "https://002-cen.s3.eu-west-2.amazonaws.com/grch38/haplotyper_normalised_v0.3/140103896-25301R0078-25NGCEN64-9527-F-99347387_markdup_recalibrated_Haplotyper.vcf.gz",
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"title": "140103896-25301R0078-25NGCEN64-9527-F-99347387_markdup_recalibrated_Haplotyper.vcf.gz"
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}
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}
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]
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},
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"request": {
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"method": "POST",
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"url": "DocumentReference"
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}
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},
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{
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"fullUrl": "urn:uuid:b6c3ebd7-53e4-450b-b46f-0e9f83d995e6",
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"resource": {
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"resourceType": "Specimen",
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"id": "b6c3ebd7-53e4-450b-b46f-0e9f83d995e6",
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"identifier": [
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{
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"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19",
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"value": "140103896-25301R0078"
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}
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],
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"type": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "24851008",
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"display": "Deoxyribonucleic acid"
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}
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]
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}
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},
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"request": {
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"method": "POST",
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"url": "Specimen"
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}
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},
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{
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"fullUrl": "urn:uuid:04a7b32d-2270-4e4e-a1bb-80f0eaa0c4cc",
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"resource": {
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"resourceType": "Device",
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"id": "04a7b32d-2270-4e4e-a1bb-80f0eaa0c4cc",
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"deviceName": [
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{
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"type": "user-friendly-name",
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"name": "Sentieon Haplotyper"
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}
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],
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"version": [
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{
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"value": "202308.03"
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}
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]
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},
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"request": {
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"method": "POST",
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"url": "Device"
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}
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},
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{
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"fullUrl": "urn:uuid:1e73bfaf-b851-463f-98df-c2b6582a948e",
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"resource": {
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"resourceType": "Device",
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"id": "1e73bfaf-b851-463f-98df-c2b6582a948e",
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"deviceName": [
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{
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"type": "user-friendly-name",
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"name": "Dias"
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}
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],
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"version": [
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{
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"value": "eggd_conductor_dias_CEN_config_v2.5.2"
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}
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]
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},
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"request": {
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"method": "POST",
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"url": "Device"
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}
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},
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{
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"fullUrl": "urn:uuid:44ae1fac-d147-43fb-87ba-35f6bc056f51",
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"resource": {
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"resourceType": "Device",
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"id": "44ae1fac-d147-43fb-87ba-35f6bc056f51",
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"manufacturer": "Illumina",
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"deviceName": [
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{
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"type": "user-friendly-name",
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"name": "Novaseq 6000"
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}
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],
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"property": [
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{
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"type": {
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"text": "Sequencing assay name"
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},
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"valueCode": [
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{
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"text": "CEN"
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}
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]
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}
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]
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},
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"request": {
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"method": "POST",
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"url": "Device"
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}
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},
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{
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"fullUrl": "urn:uuid:9bc12bd5-8e06-4f10-949e-512bb623552e",
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"resource": {
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"resourceType" : "Procedure",
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"id" : "9bc12bd5-8e06-4f10-949e-512bb623552e",
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"meta" : {
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"profile" : [
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"http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis"
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]
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},
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"extension" : [
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{
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"url" : "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-specimen",
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"valueReference" : {
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"reference" : "urn:uuid:b6c3ebd7-53e4-450b-b46f-0e9f83d995e6"
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}
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},
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{
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"extension" : [
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{
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"url" : "device",
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"valueReference" : {
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"reference" : "urn:uuid:44ae1fac-d147-43fb-87ba-35f6bc056f51"
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}
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},
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{
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"url" : "function",
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"valueCodeableConcept" : {
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"text" : "Sequencing platform"
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}
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}
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],
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"url" : "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device"
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},
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{
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"extension" : [
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{
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"url" : "device",
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"valueReference" : {
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"reference" : "urn:uuid:1e73bfaf-b851-463f-98df-c2b6582a948e"
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}
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},
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{
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"url" : "function",
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"valueCodeableConcept" : {
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"text" : "Bioinformatics Pipeline"
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}
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}
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],
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"url" : "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device"
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},
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{
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"extension" : [
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{
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"url" : "device",
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"valueReference" : {
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"reference" : "urn:uuid:04a7b32d-2270-4e4e-a1bb-80f0eaa0c4cc"
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}
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},
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{
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"url" : "function",
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"valueCodeableConcept" : {
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"text" : "Bioinformatics Variant Caller"
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}
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}
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],
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"url" : "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device"
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},
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{
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"extension" : [
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{
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"url" : "type",
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"valueCodeableConcept" : {
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"coding" : [
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{
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"system" : "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs",
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"code" : "vcf",
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"display" : "VCF"
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}
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]
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}
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},
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{
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"url" : "file",
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"valueReference" : {
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"reference" : "urn:uuid:1e6aef26-d201-43d1-b54c-087cd4ee5c24"
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}
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}
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],
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"url" : "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output"
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}
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],
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"status" : "completed",
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"category" : {
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"coding" : [
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{
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"system" : "http://terminology.hl7.org/CodeSystem/observation-category",
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"code" : "laboratory"
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}
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]
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},
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"subject" : {
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"identifier" : {
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"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
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"value": "SomePatientIdentifier"
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}
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},
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"performedDateTime" : "2025-11-25T17:49:00Z"
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},
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"request": {
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"method": "POST",
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"url": "Procedure"
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}
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},
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{
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"fullUrl": "urn:uuid:fc708a88-9a59-4efd-9ff7-c028cf2b9491",
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"resource": {
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"resourceType" : "Procedure",
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"id" : "fc708a88-9a59-4efd-9ff7-c028cf2b9491",
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"meta" : {
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"profile" : [
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"http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study"
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]
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},
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"extension" : [
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{
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"url" : "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext",
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"valueReference" : {
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"reference" : "urn:uuid:9bc12bd5-8e06-4f10-949e-512bb623552e"
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}
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}
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],
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"status" : "completed",
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"category" : {
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"coding" : [
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{
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"system" : "http://terminology.hl7.org/CodeSystem/observation-category",
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"code" : "laboratory"
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}
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]
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},
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"code" : {
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"text": "Small"
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},
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"subject" : {
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"identifier" : {
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"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
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"value": "SomePatientIdentifier"
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}
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},
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"performedDateTime" : "2025-11-25T17:49:00Z",
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"reasonCode" : [
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{
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"coding" : [
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{
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"system" : "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
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"code" : "R134",
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"display" : "Familial Hypercholesterolaemia"
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}
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]
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}
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],
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"note" : [
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{
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"text" : "Rare Disease"
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}
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]
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},
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"request": {
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"method": "POST",
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"url": "Procedure"
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}
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}
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]
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}

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