diff --git a/src/murfey/util/db.py b/src/murfey/util/db.py index 602ecf5a7..d2f8e522a 100644 --- a/src/murfey/util/db.py +++ b/src/murfey/util/db.py @@ -272,8 +272,6 @@ class CLEMImageSeries(SQLModel, table=True): # type: ignore number_of_members: int = ( 0 # Expected number of image stacks belonging to this series ) - images_aligned: bool = False # Have all members been aligned? - rgbs_created: bool = False # Have all members been colourised? composite_created: bool = False # Has a composite image been created? composite_image: Optional[str] = None # Full path to composite image @@ -322,13 +320,6 @@ class CLEMImageStack(SQLModel, table=True): # type: ignore default=None, ) - # Process checklist for each image - stack_created: bool = False # Verify that the stack has been created - image_aligned: bool = False # Verify that image alignment has been done on stack - aligned_image: Optional[str] = None # Full path to aligned image stack - rgb_created: bool = False # Verify that rgb image has been created - rgb_image: Optional[str] = None # Full path to colorised image stack - """ TEM SESSION AND PROCESSING WORKFLOW diff --git a/src/murfey/workflows/clem/register_preprocessing_results.py b/src/murfey/workflows/clem/register_preprocessing_results.py index 202cc740a..bd553d560 100644 --- a/src/murfey/workflows/clem/register_preprocessing_results.py +++ b/src/murfey/workflows/clem/register_preprocessing_results.py @@ -120,7 +120,6 @@ def register_lif_preprocessing_result( clem_img_stk.parent_lif = clem_lif_file clem_img_stk.parent_series = clem_img_series clem_img_stk.channel_name = result.channel - clem_img_stk.stack_created = True db.add(clem_img_stk) db.commit() db.refresh(clem_img_stk) @@ -309,7 +308,6 @@ def register_tiff_preprocessing_result( clem_img_stk.associated_metadata = clem_metadata clem_img_stk.parent_series = clem_img_series clem_img_stk.channel_name = result.channel - clem_img_stk.stack_created = True db.add(clem_img_stk) db.commit() db.refresh(clem_img_stk)