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cryo-clemPart of the cryo-CLEM pipeline extensionPart of the cryo-CLEM pipeline extensionserverRelates to the server componentRelates to the server component
Description
Now that we have a better of what the CLEM workflow should be, the tables and columns will need to be updated
CLEMImageSeries and CLEMImageStack
- Image alignment to happen in stages:
- Align to self, then
- Flatten the image stacks (if desired)
- Align to a reference stack
- If possible, try and keep aligned images in memory, and save only the final product
- Individual RGB images do not need to be created; columns can be removed
- Bright field + fluorescent and fluorescent-only composite images are desired; create a separate database table to register these files (
CLEMCompositeImages?)
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cryo-clemPart of the cryo-CLEM pipeline extensionPart of the cryo-CLEM pipeline extensionserverRelates to the server componentRelates to the server component