From e2001829e96206aadecdc486b1bb6e819afba72e Mon Sep 17 00:00:00 2001 From: martenson <1814954+martenson@users.noreply.github.com> Date: Wed, 16 Sep 2026 13:42:31 +0000 Subject: [PATCH] Update all tools of usegalaxy.cz --- usegalaxy.cz/annotation.yml.lock | 1 + usegalaxy.cz/assembly.yml.lock | 1 + usegalaxy.cz/chemicaltoolbox.yml.lock | 1 + usegalaxy.cz/deeptools.yml.lock | 20 ++++++++++++++++++++ usegalaxy.cz/epigenetics.yml.lock | 1 + usegalaxy.cz/evolution.yml.lock | 4 ++++ usegalaxy.cz/imaging.yml.lock | 1 + usegalaxy.cz/mapping.yml.lock | 2 ++ usegalaxy.cz/proteomics.yml.lock | 1 + usegalaxy.cz/rna_analysis.yml.lock | 21 +++++++++++++++++++++ usegalaxy.cz/statistics.yml.lock | 1 + 11 files changed, 54 insertions(+) diff --git a/usegalaxy.cz/annotation.yml.lock b/usegalaxy.cz/annotation.yml.lock index 518d490..0673e82 100644 --- a/usegalaxy.cz/annotation.yml.lock +++ b/usegalaxy.cz/annotation.yml.lock @@ -27,6 +27,7 @@ tools: - name: repeat_masker owner: bgruening revisions: + - 31763a56f1d7 - 3f987772e283 - ba6d2c32f797 tool_panel_section_id: annotation diff --git a/usegalaxy.cz/assembly.yml.lock b/usegalaxy.cz/assembly.yml.lock index 0d7ad89..2283b88 100644 --- a/usegalaxy.cz/assembly.yml.lock +++ b/usegalaxy.cz/assembly.yml.lock @@ -705,6 +705,7 @@ tools: owner: iuc revisions: - 3d1d241ceff2 + - b507ad3fe6ce tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: teloscope diff --git a/usegalaxy.cz/chemicaltoolbox.yml.lock b/usegalaxy.cz/chemicaltoolbox.yml.lock index 92b0802..a415783 100644 --- a/usegalaxy.cz/chemicaltoolbox.yml.lock +++ b/usegalaxy.cz/chemicaltoolbox.yml.lock @@ -701,6 +701,7 @@ tools: - name: get_pdb owner: bgruening revisions: + - 0a0ef624cb05 - 538790c6c21b tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox diff --git a/usegalaxy.cz/deeptools.yml.lock b/usegalaxy.cz/deeptools.yml.lock index 2be1f6b..07bfb0f 100644 --- a/usegalaxy.cz/deeptools.yml.lock +++ b/usegalaxy.cz/deeptools.yml.lock @@ -6,12 +6,14 @@ tools: owner: bgruening revisions: - 6662b1a8d326 + - 75756ed34963 - e9429e484e25 tool_panel_section_id: deeptools tool_panel_section_label: deepTools - name: deeptools_plot_heatmap owner: bgruening revisions: + - 037a701703b2 - 42cb23d80271 - e4c7985d4585 tool_panel_section_id: deeptools @@ -19,6 +21,7 @@ tools: - name: deeptools_plot_coverage owner: bgruening revisions: + - 1ad8b24eca7c - 231994413f89 - 7fda5607e777 tool_panel_section_id: deeptools @@ -27,6 +30,7 @@ tools: owner: bgruening revisions: - 00a71ff7c06b + - 7e3c511d4d24 - e479c7ca5570 tool_panel_section_id: deeptools tool_panel_section_label: deepTools @@ -34,6 +38,7 @@ tools: owner: bgruening revisions: - be95d48dd27f + - c424cde8a352 - e6d0bff01239 tool_panel_section_id: deeptools tool_panel_section_label: deepTools @@ -41,6 +46,7 @@ tools: owner: bgruening revisions: - 07418a30ed01 + - '216825708741' - 7989c6ddf634 tool_panel_section_id: deeptools tool_panel_section_label: deepTools @@ -48,12 +54,14 @@ tools: owner: bgruening revisions: - 3f9dc453c0e8 + - 915b324e649f - c06951d10364 tool_panel_section_id: deeptools tool_panel_section_label: deepTools - name: deeptools_bam_compare owner: bgruening revisions: + - 10ebedbfee31 - c89b665b45e4 - c929a006727f tool_panel_section_id: deeptools @@ -61,6 +69,7 @@ tools: - name: deeptools_alignmentsieve owner: bgruening revisions: + - 6b3c9fa6bc2c - 97b384b7bfb0 - e5a296ce8fbb tool_panel_section_id: deeptools @@ -70,6 +79,7 @@ tools: revisions: - 0e49b109abc2 - 4df95152a39e + - d13c066a4751 tool_panel_section_id: deeptools tool_panel_section_label: deepTools - name: deeptools_multi_bam_summary @@ -78,6 +88,7 @@ tools: - 01fb6a7654e6 - 1fcb7adc39b8 - b4e53394fced + - db9bba3f6180 tool_panel_section_id: deeptools tool_panel_section_label: deepTools - name: deeptools_plot_pca @@ -85,6 +96,7 @@ tools: revisions: - 443d9a9d6d11 - 7784523d9743 + - 851020617ea1 tool_panel_section_id: deeptools tool_panel_section_label: deepTools - name: deeptools_compute_matrix @@ -92,12 +104,14 @@ tools: revisions: - 19bb3e6d9e31 - a60c359ec43c + - d9ccce056684 tool_panel_section_id: deeptools tool_panel_section_label: deepTools - name: deeptools_compute_gc_bias owner: bgruening revisions: - 26983857c91a + - 38ef4853d0f5 - 56d5b797ce84 tool_panel_section_id: deeptools tool_panel_section_label: deepTools @@ -106,12 +120,14 @@ tools: revisions: - 137c4beed34b - 459cfa861f0b + - a3f625719b3f tool_panel_section_id: deeptools tool_panel_section_label: deepTools - name: deeptools_plot_correlation owner: bgruening revisions: - 2c66e43f1c86 + - 45a7f5f0fed0 - bad3ca889618 - e44978659400 tool_panel_section_id: deeptools @@ -120,12 +136,14 @@ tools: owner: bgruening revisions: - 4ed32329e0ed + - bed4b253dc69 - ca8a7f0ea872 tool_panel_section_id: deeptools tool_panel_section_label: deepTools - name: deeptools_plot_enrichment owner: bgruening revisions: + - 309af65f003c - 4431f39ede55 - 88ce7fed1488 tool_panel_section_id: deeptools @@ -133,6 +151,7 @@ tools: - name: deeptools_estimatereadfiltering owner: bgruening revisions: + - 4da54a84303b - 71082dac170c - c72a755904a9 tool_panel_section_id: deeptools @@ -140,6 +159,7 @@ tools: - name: deeptools_bigwig_average owner: bgruening revisions: + - 35b2d3ebd6d7 - 4a53856a5b85 tool_panel_section_id: deeptools tool_panel_section_label: deepTools diff --git a/usegalaxy.cz/epigenetics.yml.lock b/usegalaxy.cz/epigenetics.yml.lock index 1fa8ffb..0f8ec01 100644 --- a/usegalaxy.cz/epigenetics.yml.lock +++ b/usegalaxy.cz/epigenetics.yml.lock @@ -48,6 +48,7 @@ tools: - name: bwameth owner: iuc revisions: + - b7c3dcb76c02 - b7ce99273d62 - cf1322aeb137 - d82648ad25a3 diff --git a/usegalaxy.cz/evolution.yml.lock b/usegalaxy.cz/evolution.yml.lock index 513c1e7..87cc70b 100644 --- a/usegalaxy.cz/evolution.yml.lock +++ b/usegalaxy.cz/evolution.yml.lock @@ -43,6 +43,7 @@ tools: revisions: - 00a8c36fc98c - 2fd21f5b16bc + - 4ac97ae01aba - a9d66dc6a767 - b38f620a3628 tool_panel_section_id: evolution @@ -54,6 +55,7 @@ tools: - 1779a96f1d7c - 1aa73004ba9b - cf50aeb956f2 + - e623a56a6470 tool_panel_section_id: evolution tool_panel_section_label: Evolution - name: tn93_cluster @@ -61,6 +63,7 @@ tools: revisions: - 112d80c9ccca - 476189b83931 + - 9b04e4d36b82 - e0448bc48085 - eb6f0ec5b95e tool_panel_section_id: evolution @@ -70,6 +73,7 @@ tools: revisions: - 1d2ec0b0a0a7 - 4e68161336da + - 767905ef0314 - c176164dc8a5 - d9a642ad8ece tool_panel_section_id: evolution diff --git a/usegalaxy.cz/imaging.yml.lock b/usegalaxy.cz/imaging.yml.lock index b4e7d4f..cc92d2b 100644 --- a/usegalaxy.cz/imaging.yml.lock +++ b/usegalaxy.cz/imaging.yml.lock @@ -514,6 +514,7 @@ tools: owner: imgteam revisions: - 10eed33aa9b2 + - f0242f99a175 - f3360fbeda64 - fa8ce46a95bb - fcadded98e61 diff --git a/usegalaxy.cz/mapping.yml.lock b/usegalaxy.cz/mapping.yml.lock index 6620ed3..4d87c3a 100644 --- a/usegalaxy.cz/mapping.yml.lock +++ b/usegalaxy.cz/mapping.yml.lock @@ -100,6 +100,7 @@ tools: - 8fbd98f37c10 - 95ab864b281a - 98099e4da1fd + - c888cae9725e tool_panel_section_id: mapping tool_panel_section_label: Mapping - name: star_fusion @@ -212,6 +213,7 @@ tools: - 6da3972210ee - 95219305823a - a6ea26c1f225 + - b7c3dcb76c02 - b7ce99273d62 - cf1322aeb137 - f7094efef903 diff --git a/usegalaxy.cz/proteomics.yml.lock b/usegalaxy.cz/proteomics.yml.lock index 2b455f1..e8678b0 100644 --- a/usegalaxy.cz/proteomics.yml.lock +++ b/usegalaxy.cz/proteomics.yml.lock @@ -1935,6 +1935,7 @@ tools: - name: proteomiqon_mzmltomzlite owner: galaxyp revisions: + - aa442a308682 - acb8aba959ed tool_panel_section_id: proteomics tool_panel_section_label: Proteomics diff --git a/usegalaxy.cz/rna_analysis.yml.lock b/usegalaxy.cz/rna_analysis.yml.lock index a35f23b..fa24714 100644 --- a/usegalaxy.cz/rna_analysis.yml.lock +++ b/usegalaxy.cz/rna_analysis.yml.lock @@ -625,6 +625,7 @@ tools: - name: viennarna_rnafold owner: rnateam revisions: + - 20418b54b380 - bdb786715d28 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis @@ -639,12 +640,14 @@ tools: owner: rnateam revisions: - 42b7c0fd4370 + - 850f9d8e457f tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: viennarna_rnaalifold owner: rnateam revisions: - b63684e40386 + - d4e31df19b2e tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: segemehl @@ -670,12 +673,14 @@ tools: - name: viennarna_rnaeval owner: rnateam revisions: + - 0f4d8fcfd252 - 4f1a37b08904 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: viennarna_rnaplex owner: rnateam revisions: + - 246923437e34 - 765c1ca8c386 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis @@ -683,11 +688,13 @@ tools: owner: rnateam revisions: - 17b6ff52efc3 + - 5876fc3d059a tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: viennarna_rnapaln owner: rnateam revisions: + - 7b71768a203b - fb69ae544451 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis @@ -695,29 +702,34 @@ tools: owner: rnateam revisions: - 23c2c9a7b62e + - 41a4cd735a68 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: viennarna_rnasnoop owner: rnateam revisions: + - 533c90fa0daf - 61e51eabbb95 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: viennarna_kinfold owner: rnateam revisions: + - c152e20cfced - ef720d386200 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: viennarna_rnaaliduplex owner: rnateam revisions: + - 8c87ec6a04af - a1eeb45167e8 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: viennarna_rnaduplex owner: rnateam revisions: + - 7a560e7ef617 - 7f557b728422 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis @@ -725,17 +737,20 @@ tools: owner: rnateam revisions: - 2d0d76f6a8aa + - 83e87592e27f tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: viennarna_rnadpdist owner: rnateam revisions: - 00cf3d615a73 + - 3a517bbe7d68 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: viennarna_rnalfold owner: rnateam revisions: + - 52c4b54a1dc8 - c3162757c4cc tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis @@ -743,23 +758,27 @@ tools: owner: rnateam revisions: - 339ad356faa1 + - fe3336eb65d2 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: viennarna_rnaup owner: rnateam revisions: - 0a840ecbd627 + - a34eee6e1d04 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: viennarna_rnalalifold owner: rnateam revisions: - 271fdfd36786 + - d92c6b94bec8 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: viennarna_rnainverse owner: rnateam revisions: + - 704d4b7491bb - 9f5eed9a1c82 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis @@ -767,11 +786,13 @@ tools: owner: rnateam revisions: - c7fe6d50a6ad + - e584043a5687 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: viennarna_rnasubopt owner: rnateam revisions: + - 7bd1645d1dcf - a0a401d57947 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis diff --git a/usegalaxy.cz/statistics.yml.lock b/usegalaxy.cz/statistics.yml.lock index 0a7e0d4..5d95101 100644 --- a/usegalaxy.cz/statistics.yml.lock +++ b/usegalaxy.cz/statistics.yml.lock @@ -223,5 +223,6 @@ tools: owner: recetox revisions: - 1b7235da7640 + - 834b5b213204 tool_panel_section_id: statistics tool_panel_section_label: Statistics