macOS BUILD BIN failing on kjohnson3: build-universal.sh expects /Versions/4.6-arm64/.../libR.dylib, but actual is /Versions/4.6/.../libR.dylib

[lcscs12345]

Hi,

Appreciate your support for the Bioconductor ecosystem. Could you please take a look at the macOS BUILD BIN failure below? It looks like the packager is checking for a non-existent -arm64 path; the compiled .so links to the standard 4.6 path.

Package: DOTSeq (devel), version 0.99.6
Mac builder: kjohnson3 (macOS 13.7.7 arm64)
R: R Under development (unstable) (2026-03-01 r89506) — "Unsuffered Consequences"
Snapshot Date (report): 2026-03-16 13:40 -0400
Job: BUILD BIN

Error snippet:

>>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR DOTSeq.buildbin-libdir/DOTSeq/libs/DOTSeq.so
>>>>>>> 

>>>>>>> Paths before fix:
DOTSeq.buildbin-libdir/DOTSeq/libs/DOTSeq.so:
	DOTSeq.so (compatibility version 0.0.0, current version 0.0.0)
	/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib (compatibility version 4.6.0, current version 4.6.0)
	/usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 1700.255.0)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1345.100.2)

>>>>>>> Fix with install_name_tool:
ERROR: R installation problem: File /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/lib/libR.dylib not found!

Observation:

• The compiled .so correctly links to /Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib.
• The packager step appears to expect an arm64-suffixed R path (/Versions/4.6-arm64/...), which does not exist on the host.

Expected:

• The existing /Versions/4.6 path is correct, build-universal.sh / macosx-inst-pkg.sh should not rewrite/validate against a non-existent /Versions/4.6-arm64 path.

Related issues: #282, #286, #304.

Build reports:

• Build page: DOTSeq/kjohnson3-buildbin.html
• Raw results: DOTSeq/raw-results/kjohnson3

Thank you!

[hpages]

Fixed (see commit 1e4c166). Thanks for the report.