From be2853952eb1bd65460218d812854bb4267518e4 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Mon, 22 Jun 2026 17:53:29 +0000 Subject: [PATCH] Updating Profile --- _data/profile_versions.yaml | 2 +- pages/_profiles/LabProtocol/1.0-DRAFT.html | 407 +++++++++++++++++++++ 2 files changed, 408 insertions(+), 1 deletion(-) create mode 100644 pages/_profiles/LabProtocol/1.0-DRAFT.html diff --git a/_data/profile_versions.yaml b/_data/profile_versions.yaml index 21c068c2..9eabb289 100644 --- a/_data/profile_versions.yaml +++ b/_data/profile_versions.yaml @@ -81,7 +81,7 @@ Journal: name: Journal status: active LabProtocol: - latest_publication: 0.8-DRAFT + latest_publication: 1.0-DRAFT latest_release: null name: LabProtocol status: active diff --git a/pages/_profiles/LabProtocol/1.0-DRAFT.html b/pages/_profiles/LabProtocol/1.0-DRAFT.html new file mode 100644 index 00000000..b31f7c56 --- /dev/null +++ b/pages/_profiles/LabProtocol/1.0-DRAFT.html @@ -0,0 +1,407 @@ +--- +# spec_info content generated using GOWeb +# DO NOT MANUALLY EDIT THE CONTENT +cross_walk_url: https://docs.google.com/spreadsheets/d/1KfhBNetyt9xzI7cs3S6HwIWEsgWpPEKnGlqu19Q49vo/ +dde_ui_url: https://discovery.biothings.io/view/bioschemasdrafts/bioschemasdrafts:LabProtocol +gh_tasks: https://github.com/Bioschemas/specifications/labels/type%3A%20LabProtocol +group: labprotocols +hierarchy: [] +json-ld_url: LabProtocol/jsonld/LabProtocol_v1.0-DRAFT.json +live_deploy: /liveDeploys +mapping: +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: A structured description of a condition to be specified in the execution + of this LabProtocol. This includes physical quantities that can be set for steps + of this LabProtocol, such as temperature or time. Ideally given with a reference + to an ontology (propertyID). + example: '' + expected_types: + - PropertyValue + marginality: Recommended + property: labprotocolTempForRelease:parameter + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: Computational tool or workflow used to complete a part of this protocol. + example: '' + expected_types: + - ComputationalWorkflow + - Schema:SoftwareApplication + - SoftwareSourceCode + marginality: Recommended + property: computationalTool + type: '' + type_url: '' +- bsc_description: '' + cardinality: ONE + controlled_vocab: '' + description: Purpose and intended use stated to enable users to make a decision + as to the suitability of this creative work (e.g., lab protocol, machine learning + model, software) to their experimental problem or own use case. + example: '' + expected_types: + - DefinedTerm + - Text + - URL + marginality: Recommended + property: intendedUse + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: A laboratory equipment used by a person to follow one or more steps + described in this LabProtocol. + example: '' + expected_types: + - DefinedTerm + - Text + - URL + marginality: Recommended + property: labEquipment + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: "Reagents used in the protocol. DefinedTerm is preferred whenever possible,\ + \ e.g., ChEBI and PubChem entities can be used whenever available. Commercial\ + \ names are also acceptable. A reagent is defined as \u2018A substance used in\ + \ a chemical reaction to detect, measure, examine, or produce other substances\u2019\ + \ in [CHEBI:33893](https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:33893)." + example: '' + expected_types: + - ChemicalSubstance + - DefinedTerm + - MolecularEntity + - Text + - URL + - bioschemas:BioChemEntity + marginality: Recommended + property: reagent + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: Keywords or tags used to describe this content. Multiple entries in + a keywords list are typically delimited by commas. + example: '' + expected_types: + - DefinedTerm + - Text + - URL + marginality: Recommended + property: keywords + type: '' + type_url: '' +- bsc_description: '' + cardinality: ONE + controlled_vocab: '' + description: A description of the item. + example: '' + expected_types: + - Text + marginality: Recommended + property: description + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: "The identifier property represents any kind of identifier for any\ + \ kind of [[Thing]], such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides\ + \ dedicated properties for representing many of these, either as textual strings\ + \ or as URL (URI) links. See [background notes](/docs/datamodel.html#identifierBg)\ + \ for more details.\n " + example: '' + expected_types: + - PropertyValue + - Text + - URL + marginality: Recommended + property: identifier + type: '' + type_url: '' +- bsc_description: '' + cardinality: ONE + controlled_vocab: '' + description: The name of the item. + example: '' + expected_types: + - Text + marginality: Recommended + property: name + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: Considerations wrt ethical, legal and social aspects. + example: '' + expected_types: + - Text + marginality: Optional + property: ethicalLegalSocial + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: Situations where the LabProtocol has been successfully employed including + advantageous elements (e.g. better yield, shorter running time). + example: '' + expected_types: + - CreativeWork + - Text + marginality: Optional + property: protocolAdvantage + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: 'Applications of the protocol list the full diversity of the applications + of the method and support if is possible to extend the range of applications of + the protocol. e.g. northern blot assays, sequencing, etc. ' + example: '' + expected_types: + - CreativeWork + - Text + marginality: Optional + property: protocolApplication + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: Situations where the Protocol would be unreliable or otherwise unsuccessful. + example: '' + expected_types: + - CreativeWork + - Text + marginality: Optional + property: protocolLimitation + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: Actual outcome or result by a protocol execution. The shape of the + expected outcome/result can be described using the property 'output'. + example: '' + expected_types: + - CreativeWork + - Text + marginality: Optional + property: protocolOutcome + type: '' + type_url: '' +- bsc_description: '' + cardinality: ONE + controlled_vocab: '' + description: The length of time it takes to perform instructions or a direction + (not including time to prepare the supplies), in [ISO 8601 duration format](http://en.wikipedia.org/wiki/ISO_8601). + example: '' + expected_types: + - Duration + marginality: Optional + property: performTime + type: '' + type_url: '' +- bsc_description: '' + cardinality: ONE + controlled_vocab: '' + description: The length of time it takes to prepare the items to be used in instructions + or a direction, in [ISO 8601 duration format](http://en.wikipedia.org/wiki/ISO_8601). + example: '' + expected_types: + - Duration + marginality: Optional + property: prepTime + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: A single step item (as HowToStep, text, document, video, etc.) or a + HowToSection. + example: '' + expected_types: + - CreativeWork + - HowToStep + - Schema:HowToSection + - Text + marginality: Optional + property: step + type: '' + type_url: '' +- bsc_description: '' + cardinality: ONE + controlled_vocab: '' + description: The total time required to perform instructions or a direction (including + time to prepare the supplies), in [ISO 8601 duration format](http://en.wikipedia.org/wiki/ISO_8601). + example: '' + expected_types: + - Duration + marginality: Optional + property: totalTime + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: The author of this content or rating. Please note that author is special + in that HTML 5 provides a special mechanism for indicating authorship via the + rel tag. That is equivalent to this and may be used interchangeably. + example: '' + expected_types: + - Organization + - Person + marginality: Optional + property: author + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: A citation or reference to another creative work, such as another publication, + web page, scholarly article, etc. + example: '' + expected_types: + - CreativeWork + - Text + marginality: Optional + property: citation + type: '' + type_url: '' +- bsc_description: '' + cardinality: ONE + controlled_vocab: '' + description: The date on which the CreativeWork was created or the item was added + to a DataFeed. + example: '' + expected_types: + - Date + - DateTime + marginality: Optional + property: dateCreated + type: '' + type_url: '' +- bsc_description: '' + cardinality: ONE + controlled_vocab: '' + description: The date on which the CreativeWork was most recently modified or when + the item's entry was modified within a DataFeed. + example: '' + expected_types: + - Date + - DateTime + marginality: Optional + property: dateModified + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: Date of first broadcast/publication. + example: '' + expected_types: + - Date + - DateTime + marginality: Optional + property: datePublished + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: A resource from which this work is derived or from which it is a modification + or adaption. + example: '' + expected_types: + - CreativeWork + - URL + marginality: Optional + property: isBasedOn + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: Indicates an item or CreativeWork that this item, or CreativeWork (in + some sense), is part of. + example: '' + expected_types: + - CreativeWork + - URL + marginality: Optional + property: isPartOf + type: '' + type_url: '' +- bsc_description: '' + cardinality: ONE + controlled_vocab: '' + description: A license document that applies to this content, typically indicated + by URL. + example: '' + expected_types: + - CreativeWork + - URL + marginality: Optional + property: license + type: '' + type_url: '' +- bsc_description: '' + cardinality: MANY + controlled_vocab: '' + description: URL of a reference Web page that unambiguously indicates the item's + identity. E.g. the URL of the item's Wikipedia page, Wikidata entry, or official + website. + example: '' + expected_types: + - URL + marginality: Optional + property: sameAs + type: '' + type_url: '' +name: LabProtocol +parent_type: LabProtocol +previous_release: '' +previous_version: '' +redirect_from: '- "/devSpecs/LabProtocol/specification/" + + - "/devSpecs/LabProtocol/specification" + + - "/devSpecs/LabProtocol/" + + - "/devSpecs/LabProtocol" + + - "/specifications/drafts/LabProtocol/" + + - "/specifications/drafts/LabProtocol" + + - "/specifications/LabProtocol/" + + - "/specifications/LabProtocol" + + - "/profiles/LabProtocol/" + + - "/profiles/LabProtocol"' +spec_info: + description: 'Bioschemas profile for annotating a prospective description of experimental + tasks and operations, given as a LabProtocol objects. Version 1.0-DRAFT, prepared + by: Florian Wetzels and H. Lukas Weil' + full_example: https://github.com/BioSchemas/specifications/tree/master/LabProtocol/examples + official_type: LabProtocol + title: LabProtocol + version: 1.0-DRAFT + version_date: 2026622T175328 +spec_type: Profile +status: revision +use_cases_url: /useCases/LabProtocol +--- \ No newline at end of file